pyGenomeTracks 3.9-foss-2023a

pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable.

Accessing pyGenomeTracks 3.9-foss-2023a

To load the module for pyGenomeTracks 3.9-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load pyGenomeTracks/3.9-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• argcomplete 3.4.0
• argh 0.31.2
• gffutils 0.13
• pyGenomeTracks 3.9
• pypairix 0.3.7

More Information

For more information visit the pyGenomeTracks website.

Dependencies

This version of pyGenomeTracks has a direct dependency on: bx-python/0.10.0-foss-2023a cooler/0.10.2-foss-2023a foss/2023a h5py/3.9.0-foss-2023a HiCMatrix/17.2-foss-2023a matplotlib/3.7.2-gfbf-2023a pybedtools/0.9.1-foss-2023a pyBigWig/0.3.22-gfbf-2023a pyfaidx/0.8.1.1-GCCcore-12.3.0 Pysam/0.22.0-GCC-12.3.0 PyTables/3.8.0-foss-2023a Python/3.11.3-GCCcore-12.3.0 PyYAML/6.0-GCCcore-12.3.0 SciPy-bundle/2023.07-gfbf-2023a tqdm/4.66.1-GCCcore-12.3.0

Required By

This version of pyGenomeTracks is a direct dependent of: HiCExplorer/3.7.2-foss-2023a

Last modified on 12th August 2026