HiCExplorer 3.7.2-foss-2023a

HiCexplorer addresses the common tasks of Hi-C analysis from processing to visualization.

Accessing HiCExplorer 3.7.2-foss-2023a

To load the module for HiCExplorer 3.7.2-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load HiCExplorer/3.7.2-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• cleanlab 2.2.0
• fit-nbinom-1.1
• hic2cool 0.8.3
• HiCExplorer 3.7.2
• intervaltree 3.1.0
• termcolor 1.1.0

More Information

For more information visit the HiCExplorer website.

Dependencies

This version of HiCExplorer has a direct dependency on: Biopython/1.83-gfbf-2023a cooler/0.10.2-foss-2023a foss/2023a graphviz-python/0.20.1-GCCcore-12.3.0 h5py/3.9.0-foss-2023a Hyperopt/0.2.7-gfbf-2023a imbalanced-learn/0.12.3-gfbf-2023a jupyter-server/2.7.2-GCCcore-12.3.0 krbalancing/0.5.0b0-GCCcore-12.3.0 matplotlib/3.7.2-gfbf-2023a pybedtools/0.9.1-foss-2023a pyBigWig/0.3.22-gfbf-2023a pyGenomeTracks/3.9-foss-2023a Pysam/0.22.0-GCC-12.3.0 PyTables/3.8.0-foss-2023a Python/3.11.3-GCCcore-12.3.0 scikit-learn/1.3.1-gfbf-2023a tqdm/4.66.1-GCCcore-12.3.0 Unidecode/1.4.0-GCCcore-12.3.0

Last modified on 12th August 2026