cooler 0.10.2-foss-2023a

Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices.

Accessing cooler 0.10.2-foss-2023a

To load the module for cooler 0.10.2-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load cooler/0.10.2-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• asciitree 0.3.3
• cooler 0.10.2
• cytoolz 0.12.3
• dill 0.3.8
• multiprocess 0.70.16
• toolz 0.12.0

More Information

For more information visit the cooler website.

Dependencies

This version of cooler has a direct dependency on: foss/2023a h5py/3.9.0-foss-2023a pyfaidx/0.8.1.1-GCCcore-12.3.0 Python/3.11.3-GCCcore-12.3.0 PyYAML/6.0-GCCcore-12.3.0 SciPy-bundle/2023.07-gfbf-2023a

Required By

This version of cooler is a direct dependent of: HiCExplorer/3.7.2-foss-2023a HiCMatrix/17.2-foss-2023a pyGenomeTracks/3.9-foss-2023a

Last modified on 12th August 2026