HiCMatrix 17.2-foss-2023a

This library implements the central class of HiCExplorer to manage Hi-C interaction matrices.

Accessing HiCMatrix 17.2-foss-2023a

To load the module for HiCMatrix 17.2-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load HiCMatrix/17.2-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• HiCMatrix 17.2
• intervaltree 3.1.0

More Information

For more information visit the HiCMatrix website.

Dependencies

This version of HiCMatrix has a direct dependency on: cooler/0.10.2-foss-2023a foss/2023a PyTables/3.8.0-foss-2023a Python/3.11.3-GCCcore-12.3.0 SciPy-bundle/2023.07-gfbf-2023a

Required By

This version of HiCMatrix is a direct dependent of: pyGenomeTracks/3.9-foss-2023a

Last modified on 12th August 2026