EarlGrey-ParTEA

ParTEA (Pangenome Transposable Element Analysis) is a Snakemake-based pipeline that brings the party to multi-genome TE annotation! It extends EarlGrey to process multiple genomes in parallel, build pangenome TE libraries, and perform comparative transposable element analysis across species.

More Information

For more information visit the EarlGrey-ParTEA website.

Available Versions

These versions of EarlGrey-ParTEA are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.