EarlGrey-ParTEA 0.1.6

ParTEA (Pangenome Transposable Element Analysis) is a Snakemake-based pipeline that brings the party to multi-genome TE annotation! It extends EarlGrey to process multiple genomes in parallel, build pangenome TE libraries, and perform comparative transposable element analysis across species.

Accessing EarlGrey-ParTEA 0.1.6

To load the module for EarlGrey-ParTEA 0.1.6 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load EarlGrey-ParTEA/0.1.6

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the EarlGrey-ParTEA website.

Last modified on 30th April 2026