Mugsy 1.2.3-GCCcore-13.3.0

Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pairwise alignment, a custom graph based segmentation procedure for identifying collinear regions, and the segment-based progressive multiple alignment strategy from Seqan::TCoffee. Mugsy accepts draft genomes in the form of multi-FASTA files and does not require a reference genome.

Accessing Mugsy 1.2.3-GCCcore-13.3.0

To load the module for Mugsy 1.2.3-GCCcore-13.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load Mugsy/1.2.3-GCCcore-13.3.0

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Mugsy website.

Dependencies

This version of Mugsy has a direct dependency on: GCCcore/13.3.0 Perl/5.38.2-GCCcore-13.3.0

Last modified on 19th November 2025