Monopogen 1.6.0-foss-2024a

Monopogen is an analysis package for SNV calling from single-cell sequencing, developed and maintained by Ken chen's lab in MDACC. Monopogen works on sequencing datasets generated from single cell RNA 10x 5', 10x 3', single ATAC-seq technoloiges, scDNA-seq etc.

Accessing Monopogen 1.6.0-foss-2024a

To load the module for Monopogen 1.6.0-foss-2024a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load Monopogen/1.6.0-foss-2024a

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Monopogen website.

Dependencies

This version of Monopogen has a direct dependency on: foss/2024a Java/17 Pillow/10.4.0-GCCcore-13.3.0 Pysam/0.22.1-GCC-13.3.0 Python/3.12.3-GCCcore-13.3.0 R/4.5.0-gfbf-2024a R-bundle-CRAN/2025.06-foss-2024a SciPy-bundle/2024.05-gfbf-2024a

Last modified on 17th June 2026