TEtranscripts 2.2.3-foss-2023a

TEtranscripts and TEcount takes RNA-seq (and similar data) and annotates reads to both genes & transposable elements. TEtranscripts then performs differential analysis using DESeq2.

Accessing TEtranscripts 2.2.3-foss-2023a

To load the module for TEtranscripts 2.2.3-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load TEtranscripts/2.2.3-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the TEtranscripts website.

Dependencies

This version of TEtranscripts has a direct dependency on: foss/2023a Pysam/0.22.0-GCC-12.3.0 Python/3.11.3-GCCcore-12.3.0 R/4.4.1-gfbf-2023a R-bundle-Bioconductor/3.19-foss-2023a-R-4.4.1

Last modified on 26th February 2026